PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 301aa    MW: 33210.2 Da    PI: 10.3704
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
   XP_016476123.1  5 KQKWTPEEEAALKAGVRKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 55
                     79***********************************66**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.318158IPR017930Myb domain
SuperFamilySSF466896.24E-16269IPR009057Homeodomain-like
SMARTSM007175.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-15456IPR009057Homeodomain-like
PfamPF002491.6E-9555IPR001005SANT/Myb domain
CDDcd116602.25E-19656No hitNo description
SuperFamilySSF467851.74E-17118197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.2E-16118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-15119189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.798120188IPR005818Linker histone H1/H5, domain H15
PfamPF005388.9E-9125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV RKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR LALKGMNQTR KQDENSLALI IEAQSDEEIV EARLATTSSG SPQIGGSKRS  120
IIRLDNLIME AISNLKEPGG SNKTTIATYI EDQYWAPPNF KRLLSAKLKY LTATGRLIKV  180
KRKYRIAPMS ALSDRRRMPS IPLLESGQRI SNRVDRDDMN MRTTKAQVDL ELATMRSMTL  240
QEAAAAAAQA VAEAEAAIEE AEEAARVAEA AEAEAEAAQA FAKAAMKTLQ GRSIPRMMIR  300
A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331358e-59AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence.
GenBankHG9754408e-59HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755138e-59HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476126.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476125.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476123.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476122.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476121.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016476120.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-105TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1CF221e-150M1CF22_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661341e-150(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-101telomere repeat binding factor 1